Differences

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--- peaksearching [2018/06/28 12:00] – estelle
+++ peaksearching [2019/02/24 11:01] (current) – estelle
@@ Line 4: / Line 4: @@
-For that, use:
+For that, use for example:
-<WRAP center round box 90%>
+<WRAP center box 90%>
 peaksearch.py -n ../Simulation/simu_50grains -f 0 -l 111 -d ../Simulation/simu_50grainsm20000.edf -t 20
 </WRAP>
@@ Line 16: / Line 16: @@
           * 111: the number of the last .edf file;
           * simu_50grainsm20000.edf: the median image
-          * 20: the value of the treshold you want to fix to filter the peaks.
+          * 20: the value of the treshold you want to fix to filter the peaks (you can ask several filter when you add -t options).
+The command create two files (.flt and .spt) for each filter in the current folder.
+**Be careful** : do not remove the median image (-d ...) if you already did it once (for example in the diamond spots removal for cleaning a real dataset)!! Otherwise, Peaksearch will not find the smaller peaks anymore.
+{{ :seb-1345-peaks.jpg?nolink&400 |}}
+In this image, the Peaksearch (in red) should have found much more peaks than it did, cause some seems really intense. I surely did remove two times the median, once during diamond removal and a second during peakshearching.