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--- processing:clean-diamond-anvil-cell-data [2019/09/03 17:10] – smerkel
+++ processing:clean-diamond-anvil-cell-data [2019/09/03 18:13] (current) – smerkel
@@ Line 9: / Line 9: @@
 ===== Shadows =====
+Diamond anvil cells have a limited opening and create shadows due to the seat supporting the diamonds.
+We we started multigrain crystallography experiments, we though this was going to be a problem and created a script called [[software:remove-shadow|timelessDACShadow]] to do so.
+As a matter of fact, this is not very useful as there simply nothing in these regions. You can probably leave the shadows as they are.
 ===== Diamond spots removal =====
@@ Line 65: / Line 71: @@
 As a test, the image below shows the [[processing:search_for_peaks|sample peaks we extracted]] from the final image. This would not have been possible on the raw diffraction image.
-[{{ :processing:diamondremoval:diamond-removed-median-peaks.jpg?nolink&400 | Peaks extracted from the diffraction image, after running the diamond removal script }}]
+[{{ :processing:diamondremoval:diamond-removed-median-peaks.jpg?direct&300 | Peaks extracted from the diffraction image, after running the diamond removal script }}]
+==== Inpainting ====
+By default, the [[software:timelessDiamondSpotRemoval|timelessDiamondSpotRemoval script]] replaces the masked region with the median intensity of the image. Sometimes, this can lead to problems.
+In such case, you can use //inpainting// which will try to fill the gap as well as possible. This is done by adding ''--inpaint True'' to the command line arguments.
+The script will be significantly slower, but gaps will be filled with values matching the mask's surroundings. As a matter of fact, we have had little use of this option but, at least, it is available.
+[{{:processing:diamondremoval:diamond-removed-median.jpg?direct&300 | Diffraction image, after running the diamond removal script and replacing masked values with the image median}}]
+[{{ :processing:diamondremoval:diamond-removed-inpaint.jpg?direct&300|Same diffraction image, after running the diamond removal script and replacing masked values with inpainting}}]