Differences

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--- processing:extractgvegrain [2019/07/22 17:34] – created smerkel
+++ processing:extractgvegrain [2019/07/22 17:37] (current) – smerkel
@@ Line 4: / Line 4: @@
 You can use it once you have run an indexing. The input files are
-  * the output file from the indexing (GrainSpotter),
+  * the output file from the indexing ([[processing:indexing_with_grainspotter|with GrainSpotter]] at present, the code could be improved to also deal with [[processing:indexing_with_imaged11|ImageD11 indexings]]),
-  * the flt file with the list of peaks that was used for indexing.
+  * the flt file with the [[processing:search_for_peaks|list of peaks]] that was used for indexing.
 If you run the code without the ''saveall option'', it will save all peaks that were assigned to a grain (any grain) into the output file you defined.
@@ Line 11: / Line 11: @@
 If you run the code with the ''saveall option'', it will save all peaks that were assigned to a grain (any grain) into the output file you defined, as well as a separate file for each grain in the indexing file and name them as ''newFLT-GrainXXX.flt'', where ''newFLT'' is what you defined for output.
-You can then overlay the diffraction data with the peaks that were assign (either to all or to a single grain) using Fabian.
+You can then overlay the diffraction data with the peaks that were assign (either to all or to a single grain) using [[software:fabian|Fabian]].
 ==== timelessSaveFLTGrains ====