Differences

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--- processing:search_for_peaks [2019/02/20 22:29] – smerkel
+++ processing:search_for_peaks [2019/02/20 22:51] (current) – smerkel
@@ Line 16: / Line 16: @@
 If you already removed the background (in the diamond spot removal step, for instance), you should not remove any background anymore. This would remove the background twice!
+Full example
+  peaksearch.py -n ../Data/data -f 0 -l 111 -d ../Data/median.edf -t 20
+in which
+  * ../Data/: path to the folder with the .edf files,
+  * data: the stem (common part) of the .edf files;
+  * 0: number of the first .edf file,
+  * 111: number of the last .edf file,
+  * ../Data/median.edf: name and path of the median image,
+  * 20: a threshold over which to identify peaks (you can request multiple thresholds with multiple -t options).
 There are other parameters you can apply. To get a full list:
@@ Line 34: / Line 44: @@
 Below is an example of Fabian showing a diffraction image in Fabian after background processing and artifact removing as well as the same image with peaks overlay after a peak search.
-[{{:processing:diff-1345-diamond-removed.jpg?300|Diffraction image in Fabian after background processing and artifact removing)}}][{{:processing:diff-1345-peaks.jpg?300|Same image showing peaks after peak search }}]
+[{{:processing:diff-1345-diamond-removed.jpg?300 |Diffraction image in Fabian after background processing and artifact removing)}}][{{ :processing:diff-1345-peaks.jpg?300|Same image showing peaks after peak search }}]