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processing:workflow_dac_data [2019/02/15 16:46] – smerkelprocessing:workflow_dac_data [2020/03/25 10:36] (current) – [Workflow outline] matthias
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 Here is a simple outline of what you should do: Here is a simple outline of what you should do:
   - Calibrate your experiment. This should be done with either [[software:dioptas|Dioptas]] or [[software:fit2d|Fit2D]]. Beam centers and detector distances you find in Dioptas or Fit2D will be used at a later stage of the processing.   - Calibrate your experiment. This should be done with either [[software:dioptas|Dioptas]] or [[software:fit2d|Fit2D]]. Beam centers and detector distances you find in Dioptas or Fit2D will be used at a later stage of the processing.
-  - Understand the [[processing:understand_O_matrix|concept of an O-Matrix]] and figure out your own.+  - Understand the [[dac_experiments:geometry|concept of an O-Matrix]] and figure out your own.
   - We often also calibrate [[software:Maud|Maud]] as this point. We will use it later to figure out the cell parameters of our sample. As you start using MAUD keep a note of the parameters you use to convert your tiff images into ESG. You will need to use exactly the same ones on your sample images later.   - We often also calibrate [[software:Maud|Maud]] as this point. We will use it later to figure out the cell parameters of our sample. As you start using MAUD keep a note of the parameters you use to convert your tiff images into ESG. You will need to use exactly the same ones on your sample images later.
   - Later, for each P/T point you wish to study   - Later, for each P/T point you wish to study
-     * Identify images with double diffraction (where the single-crystal diffraction from the diamond anvil acts as a secondary source) with sufficient intensity to get mixed up with data, delete them, and replace them with either the average of the two surrounding images or create an empty image,+     * [[processing:remove_bad_images|Remove bad images]] and replace them with either the average of the two surrounding images or create an empty image,
      * Calculate an average and a median image,      * Calculate an average and a median image,
      * Use MAUD or Dioptas or anything else to identify your phases and their cell parameters. We often work on the average images to do so,      * Use MAUD or Dioptas or anything else to identify your phases and their cell parameters. We often work on the average images to do so,
      * [[processing:clean-diamond-anvil-cell-data|Clean up your data]] for diamond diffraction spots, DAC shadows, etc      * [[processing:clean-diamond-anvil-cell-data|Clean up your data]] for diamond diffraction spots, DAC shadows, etc
      * [[processing:search_for_peaks|Search for peaks]],      * [[processing:search_for_peaks|Search for peaks]],
-     * Calculate your G-Vectors, +     * [[processing:compute_gvectors|Calculate your G-Vectors]], 
-     * Index your grains with GrainSpotter!+     * [[processing:indexing_with_grainspotter|Index your grains with GrainSpotter!]] 
 +     * [[processing:peakremoval|Treat side phases first (e.g. pressure medium, pressure marker, other phases)]] 
 +     * ... 
 + 
 +{{:processing:general_data_processing_flow_chart_.png?600|Data processing flow chart}}
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