Go to the newly created folder (which is still empty). Then type to the Konsole:

  peaksearch.py -n ../'directory'/'directory stem' -f 0 -l 111 -d ../'directory'/'median file.edf' -t &&&

-f 0 marks the number of the first image, -l 111 the number of the last image.

&&& is a space holder for the intensity threshold. You can also add more than one threshold by exceeding the code by another -t &&& -t &&& -t &&& …, depending on how many thresholds you want to test.

From now on, we call the newly created files processed data. Proceed with ImageD11 to look at the processed data.