software:timelesstools
This is an old revision of the document!
Table of Contents
TIMEleSS tools
Those are a set of tools written for and during the TIMEleSS project.
The source code for the tools is at https://github.com/FABLE-3DXRD/TIMEleSS. The user manuals for each script will be in this wiki.
Installation
Go to https://github.com/FABLE-3DXRD/TIMEleSS and click on the green button “clone or download”. Click on “Download ZIP”. After the download is finished, navigate to the “Downloads” folder and unpack the ZIP folder to a directory of your choice.
Then
- Open the Konsole or any terminal window,
- navigate to the unpacked TIMEleSS directory,
- there should be a file called
setup.py, - Type the following to the Konsole:
python setup.py build, - If you get an error, there might be some of the additional libraries still missing,
- Install the TIMEleSS tools on your system:
python setup.py install.
List of scripts
This list will get longer over time. At present, you will have access to the following commands
- Test
timelessTest, which runs several reading and parsing operations to make sure everything works well,
- Image tools
timelessTiff2edfto convert series of tiff files into series of EDF filestimelessMccd2edfto convert series of MarCCD files into series of EDF filestimelessEdf2tiffto convert a single EDF file into a tiff filetimelessEdf2tiffFileSeriesto convert series of EDF files into series of tiff filestimelessAverageEDFto take the average of two or more EDF imagestimelessMeanFileSeriesto take the mean of two or more EDF imagestimelessCreateEmptyImageto produce an empty (black) image
- Diffraction pre-processing for diamond anvil cell experiments
timelessDACShadowto remove the shadow which is produced during a 3D image acquisitiontimelessDiamondSpotRemovalto take out spots from the single-crystal diamond anvils
- Grain tools
timelessRemoveUsedGVE, removes G-vectors which are indexed in a GrainSpotter run so you can run GrainSpotter again,timelessGrainComparison, which is meant to compare the orientations of grains between different sourcestimelessGrainSpotterMerge, which is meant to merge the output of multiple GrainSpotter runs into onetimelessSaveFLTGrainsto extract the peaks corresponding to a graintimelessPlotIndexedGrainto graphically evaluate the indexing quality for a given graintimelessExtractEulerAnglesto convert a log file (from GrainSpotter) into a list of Euler angles (necessary for MTeX)
- Peaks management
timelessClearGVEGrains(more or less identical totimelessRemoveUsedGVE, for usage see description above)timelessSaveFLTGrainstimelessClearFLTGrainsto remove the already used peaks
software/timelesstools.1575551393.txt.gz · Last modified: by smerkel
